Data & Resources

Open datasets, analysis pipelines, and curated external resources from the lab.

Datasets

Our datasets are currently stored and accessible on Synapse: synapse.org/Synapse:syn36812517.

Code & Tools

Omix Analysis Pipeline

R-based pipeline for the processing, normalisation, and differential analysis of synaptic proteomics data. Includes modules for batch correction, pathway enrichment, and integration with transcriptomic datasets.

R Proteomics Pipeline
GitHub (coming soon)

External Resources

We couldn't do our research without these resources.

SynGO

The Synaptic Gene Ontology knowledgebase — a community-curated resource providing standardised gene ontology terms and annotations for synaptic biology. Essential for contextualising synaptic proteomics data.

Synapse Gene ontology Knowledgebase
syngoportal.org

GNPC — Global Neuroproteome Center

A resource for neuroproteomics data and tools, supporting the study of proteins in the nervous system. Used to contextualise synaptic protein expression and disease-related changes.

Proteomics Human brain Reference
neuroproteome.org

Allen Brain Atlas

Comprehensive gene expression atlases of the human and mouse brain, providing spatial transcriptomic data at cellular and regional resolution. Used to map the brain-wide distribution of synaptic gene expression.

Spatial Transcriptomics Atlas
brain-map.org

AD Knowledge Portal

A Sage Bionetworks platform hosting multi-omic data from Alzheimer's disease research consortia, including the Accelerating Medicines Partnership in AD (AMP-AD). A major resource for cross-cohort analyses.

Multi-omics AD Open access
adknowledgeportal.synapse.org
We are committed to open science. Where possible, data and code associated with our publications are deposited in publicly accessible repositories. If you cannot find what you are looking for, please contact us directly.